Glyma11g09970 - SoyBase

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Report for Sequence Feature Glyma11g09970

Feature Type:	gene_model
Chromosome:	Gm11
Start:	7130744
stop:	7135658
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g09970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13410	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55546.1); Has 49 Blast hits to 49 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). \| chr3:4362149-4364032 REVERSE LENGTH=321	SoyBase	E_val: 8.00E-87	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0007033	GO-bp	Annotation by Michelle Graham. GO Biological Process: vacuole organization	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_H2KX77	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=H2KX77_ORYSJ	SoyBase	E_val: 2.00E-62	ISS
UniRef100_I1LIK5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LIK5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g09970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g09970

Paralog	Evidence	Comments
Glyma12g02310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g09970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g094000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g09970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g09970

Limit To All Plant Sequences

>Glyma11g09970.2   sequence type=transcript   gene model=Glyma11g09970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCATTTTTAAATTGTTTTTTATTATTAAAAAAAATCGAGCATATATGCATTTAATCATTAATCATAGATCTTAATCGAGAGCGAGGCATGTAGAAAGAGTGGTGTCCATTGCAATTTTTCTAATAAAAACAAGAAAAATAATAATAGCAAAATAGACACCATTAGGTTTTCATTCTCTTTCTCTCTCTCTCTGATTCGATCGATTTCGATTGTTGAATTCATCCCATCGTGGAGCCTTCAAATTTGTAGTTGAACAACGATGGTGCTGCCGCTATTTGCTGCTTTCATTCTCTTTTTTGCTTTTATTCCGAATGGATTGTTAGCAGTTCCTTCCACCGTCCCCGCATTCCTTTGGTCATCACATTATGAACTGGCCTCTGAAAATGGATTGAAGGAATCTGTAAATTACCAAGTCATTTCTCCAAAAGATCTAGCAAAATCTGTTTTTTCTGAAGCAGGCTGGTCAAATTTTCTGTGCAAAGGAAAGAAACTTCATGAGCCTCTGGATCTGGCACTCTTATTTGTTGGTAGAGAGTTACAATCTTCAGATTTAAACATGAACAAACATGCAGACTCAGCTCTTTTGGACCTGCTCAAGATCTCTTTCGCCAGATCCAACACTTCTGTGGCGTTTCCCTATGTTTCTACATCAGAGGATGTGCTTTTGGAAAACTCATTGATTTCAGGATTTGCTGAAGCCTGTGGAGATATGGGAATTGGCAATGTTGCTTTCCATGGATCTTGCTCCATGGATGGGGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTCAAGACTATTTGATCAAGAGGATGGAAGAGAGTCACAGAGGGAAAACAGATTTGGTTGTGTTCTGCAATGAAGGCTCTCAAGCTGTTAAAAATGTAGACAAGACACAATCTGAAGGGGAAGTTTTATCCAATCTTATCAGTTCTGTGGAGGAATCTGGTGCAAAATATGCCGTTCTTTATGTGTCGGATCCCTCCAGGTCAATCCAGTATCCTTCTTACAGGGATCTGCAAAGATTTCTAGCAGAAAGTACAGCCGGGAATGAATCAACCAATTCCACAATTTGTGATGAAGTCTGCCAGCTTAAATCATCTCTTCTAGAGGGAATTTTAGTGGGTATAGTTTTGCTAATAATTTTGATATCGGGCCTTTGCTGCATGATGGGAATTGACACCCCAACAAGATTTGAGACGCCACAAGAGTAATGATCCGTTTGCTGAAGCTAATAATTGTTATGATGCTCGGCCTACTGGATTAAAATATTACTGCTATATTATTTGCGAATTTTACGGGAGGCTCTGATAAGTGTTCTGTAGTTGATGACTTGTCTCAGGGACTTTTTATATTGAATTTTAAAATAATTTGTATCAGTATATAAAAATAAAACTTCATCCTAGGTTTAATTTTGATCCCGCCACTGTCAGTTGTAAAATTTGAAGAAGAAATTTCAGATTGTGTTGTATTTTTTTAACTGTCTCCAAATTTGCTCCGTTCGATGTGCATAATTGCTGATCGATGCAGTTCCAAGTTTATTTCTGCTGGGTTTTGAATTGAAGTTTGAAGTTGATTTGAAGAATGTTTAGCAATATGGTAAAATTTCGAGTTAAAGTTTGAGATTGAAGTTAAAGATATTAAGAAGTGGAAGTTCTAAAAGTAGACAAGTGTCAATGAAGGATTTCAAGGTAAGGGTTCAAATTGAGAGGAAGTTCATAACAATTACCTTGAGAGAGATTTTGAAATTTGTTTACGTGTTTGTAACTTTGTATAGATCAATCATTATGGTTGGAAATCTGAATAGGATATTTGTATTCTATTTTTTATAGTTGAAACAAATCGAATACTTTGTTATGTTTTATACATAAATAAATGGTTACTGGTTCAACAGGTTGAATAATTA

Coding sequences of Glyma11g09970

Limit To All Plant Sequences

>Glyma11g09970.1   sequence type=CDS   gene model=Glyma11g09970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCTGCCGCTATTTGCTGCTTTCATTCTCTTTTTTGCTTTTATTCCGAATGGATTGTTAGCAGTTCCTTCCACCGTCCCCGCATTCCTTTGGTCATCACATTATGAACTGGCCTCTGAAAATGGATTGAAGGAATCTGTAAATTACCAAGTCATTTCTCCAAAAGATCTAGCAAAATCTGTTTTTTCTGAAGCAGGCTGGTCAAATTTTCTGTGCAAAGGAAAGAAACTTCATGAGCCTCTGGATCTGGCACTCTTATTTGTTGGTAGAGAGTTACAATCTTCAGATTTAAACATGAACAAACATGCAGACTCAGCTCTTTTGGACCTGCTCAAGATCTCTTTCGCCAGATCCAACACTTCTGTGGCGTTTCCCTATGTTTCTACATCAGAGGATGTGCTTTTGGAAAACTCATTGATTTCAGGATTTGCTGAAGCCTGTGGAGATATGGGAATTGGCAATGTTGCTTTCCATGGATCTTGCTCCATGGATGGGGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTCAAGACTATTTGATCAAGAGGATGGAAGAGAGTCACAGAGGGAAAACAGATTTGGTTGTGTTCTGCAATGAAGGCTCTCAAGCTGTTAAAAATGTAGACAAGACACAATCTGAAGGGGAAGTTTTATCCAATCTTATCAGTTCTGTGGAGGAATCTGGTGCAAAATATGCCGTTCTTTATGTGTCGGATCCCTCCAGGTCAATCCAGTATCCTTCTTACAGGGATCTGCAAAGATTTCTAGCAGAAAGTACAGCCGGGAATGAATCAACCAATTCCACAATTTGTGATGAAGTCTGCCAGCTTAAATCATCTCTTCTAGAGGGAATTTTAGTGGTAAGTTTCCTTGTCCATTTTTACAAGTGCAGTAGCTCAATGATCTGGGAGTTGTCTTGTTTTTTTAACTCCATTTTTTTTCTTTTCCTTGATGAGTAA

>Glyma11g09970.2   sequence type=CDS   gene model=Glyma11g09970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCTGCCGCTATTTGCTGCTTTCATTCTCTTTTTTGCTTTTATTCCGAATGGATTGTTAGCAGTTCCTTCCACCGTCCCCGCATTCCTTTGGTCATCACATTATGAACTGGCCTCTGAAAATGGATTGAAGGAATCTGTAAATTACCAAGTCATTTCTCCAAAAGATCTAGCAAAATCTGTTTTTTCTGAAGCAGGCTGGTCAAATTTTCTGTGCAAAGGAAAGAAACTTCATGAGCCTCTGGATCTGGCACTCTTATTTGTTGGTAGAGAGTTACAATCTTCAGATTTAAACATGAACAAACATGCAGACTCAGCTCTTTTGGACCTGCTCAAGATCTCTTTCGCCAGATCCAACACTTCTGTGGCGTTTCCCTATGTTTCTACATCAGAGGATGTGCTTTTGGAAAACTCATTGATTTCAGGATTTGCTGAAGCCTGTGGAGATATGGGAATTGGCAATGTTGCTTTCCATGGATCTTGCTCCATGGATGGGGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTCAAGACTATTTGATCAAGAGGATGGAAGAGAGTCACAGAGGGAAAACAGATTTGGTTGTGTTCTGCAATGAAGGCTCTCAAGCTGTTAAAAATGTAGACAAGACACAATCTGAAGGGGAAGTTTTATCCAATCTTATCAGTTCTGTGGAGGAATCTGGTGCAAAATATGCCGTTCTTTATGTGTCGGATCCCTCCAGGTCAATCCAGTATCCTTCTTACAGGGATCTGCAAAGATTTCTAGCAGAAAGTACAGCCGGGAATGAATCAACCAATTCCACAATTTGTGATGAAGTCTGCCAGCTTAAATCATCTCTTCTAGAGGGAATTTTAGTGGGTATAGTTTTGCTAATAATTTTGATATCGGGCCTTTGCTGCATGATGGGAATTGACACCCCAACAAGATTTGAGACGCCACAAGAGTAA

Predicted protein sequences of Glyma11g09970

Limit To All Plant Sequences

>Glyma11g09970.1   sequence type=predicted peptide   gene model=Glyma11g09970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLPLFAAFILFFAFIPNGLLAVPSTVPAFLWSSHYELASENGLKESVNYQVISPKDLAKSVFSEAGWSNFLCKGKKLHEPLDLALLFVGRELQSSDLNMNKHADSALLDLLKISFARSNTSVAFPYVSTSEDVLLENSLISGFAEACGDMGIGNVAFHGSCSMDGANHEEITTLHSVQDYLIKRMEESHRGKTDLVVFCNEGSQAVKNVDKTQSEGEVLSNLISSVEESGAKYAVLYVSDPSRSIQYPSYRDLQRFLAESTAGNESTNSTICDEVCQLKSSLLEGILVVSFLVHFYKCSSSMIWELSCFFNSIFFLFLDE*

>Glyma11g09970.2   sequence type=predicted peptide   gene model=Glyma11g09970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLPLFAAFILFFAFIPNGLLAVPSTVPAFLWSSHYELASENGLKESVNYQVISPKDLAKSVFSEAGWSNFLCKGKKLHEPLDLALLFVGRELQSSDLNMNKHADSALLDLLKISFARSNTSVAFPYVSTSEDVLLENSLISGFAEACGDMGIGNVAFHGSCSMDGANHEEITTLHSVQDYLIKRMEESHRGKTDLVVFCNEGSQAVKNVDKTQSEGEVLSNLISSVEESGAKYAVLYVSDPSRSIQYPSYRDLQRFLAESTAGNESTNSTICDEVCQLKSSLLEGILVGIVLLIILISGLCCMMGIDTPTRFETPQE*

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